Characterising information gains and losses when collecting multiple epidemic model outputs

K. Sherratt, A. Srivastava, K. Ainslie, D. E. Singh, A. Cublier, M. C. Marinescu, J. Carretero, A. Cascajo Garcia, N. Franco, L. Willem, S. Abrams, C. Faes, P. Beutels, N. Hens, S. Mueller, B. Charlton, R. Ewert, S. Paltra, C. Rakow, J. RehmannT. Conrad, C. Schuette, K. Nagel, R. Grah, R. Niehus, B. Prasse, F. Sandmann, S. Funk, Katharine Sherratt

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Abstract

Background: Collaborative comparisons and combinations of epidemic models are used as policy-relevant evidence during epidemic outbreaks. In the process of collecting multiple model projections, such collaborations may gain or lose relevant information. Typically, modellers contribute a probabilistic summary at each time-step. We compared this to directly collecting simulated trajectories. We aimed to explore information on key epidemic quantities; ensemble uncertainty; and performance against data, investigating potential to continuously gain information from a single cross-sectional collection of model results. Methods: We compared projections from the European COVID-19 Scenario Modelling Hub. Five teams modelled incidence in Belgium, the Netherlands, and Spain. We compared July 2022 projections by incidence, peaks, and cumulative totals. We created a probabilistic ensemble drawn from all trajectories, and compared to ensembles from a median across each model's quantiles, or a linear opinion pool. We measured the predictive accuracy of individual trajectories against observations, using this in a weighted ensemble. We repeated this sequentially against increasing weeks of observed data. We evaluated these ensembles to reflect performance with varying observed data. Results: By collecting modelled trajectories, we showed policy-relevant epidemic characteristics. Trajectories contained a right-skewed distribution well represented by an ensemble of trajectories or a linear opinion pool, but not models’ quantile intervals. Ensembles weighted by performance typically retained the range of plausible incidence over time, and in some cases narrowed this by excluding some epidemic shapes. Conclusions: We observed several information gains from collecting modelled trajectories rather than quantile distributions, including potential for continuously updated information from a single model collection. The value of information gains and losses may vary with each collaborative effort's aims, depending on the needs of projection users. Understanding the differing information potential of methods to collect model projections can support the accuracy, sustainability, and communication of collaborative infectious disease modelling efforts.

Original languageEnglish
Article number100765
JournalEpidemics
Volume47
Issue number100765
DOIs
Publication statusPublished - Jun 2024

Funding

KS, SF funded by ECDC and Wellcome (210758). AS funded by National Science Foundation Award 2135784, 2223933. KA funded by Netherlands Ministry of Health, Welfare and Sport, and European Union's Horizon 2020 research and innovation programme - project EpiPose (Grant agreement no. 101003688). DES, AC, MM, JC, ACG funded by U3CM, Instituto de Salud Carlos III, Gobierno de Espa\u00F1a, European Commission. NF, LW, StA, CF, PB, NH funded by European Union's Horizon 2020 research and innovation programme (Grant no. 101003688 \u2013 EpiPose project). SM, BC, RE, SP, CR, JR, TC, CS, KN funded by Ministry of research and education (BMBF) Germany (Grants no. 031L0300D, 031L0302A). RG, RN, BP, FS funded by ECDC. KS, SA, SF funded by ECDC and Wellcome (210758/Z/18/Z). AS funded by National Science Foundation Award 2135784, 2223933. KA funded by Netherlands Ministry of Health, Welfare and Sport, and European Union\u2019s Horizon 2020 research and innovation programme - project EpiPose (grant agreement number 101003688). DES, AC, MM, JC, ACG funded by U3CM, Instituto de Salud Carlos III, Gobierno de Espa\u00F1a, European Commission. NF, LW, SA, CF, PB, NH funded by European Union\u2019s Horizon 2020 research and innovation programme (grant number 101003688 \u2013 EpiPose project). SM, BC, RE, SP, CR, JR, TC, CS, KN funded by Ministry of research and education (BMBF) Germany (grants number 031L0300D, 031L0302A). RG, RN, BP, FS funded by ECDC. KS, SF funded by ECDC and Wellcome (210758/Z/18/Z). AS funded by National Science Foundation Award 2135784, 2223933. KA funded by Netherlands Ministry of Health, Welfare and Sport, and European Union\u2019s Horizon 2020 research and innovation programme - project EpiPose (grant agreement number 101003688). DES, AC, MM, JC, ACG funded by U3CM, Instituto de Salud Carlos III, Gobierno de Espa\u00F1a, European Commission. NF, LW, StA, CF, PB, NH funded by European Union\u2019s Horizon 2020 research and innovation programme (grant number 101003688 \u2013 EpiPose project). SM, BC, RE, SP, CR, JR, TC, CS, KN funded by Ministry of research and education (BMBF) Germany (grants number 031L0300D, 031L0302A). RG, RN, BP, FS funded by ECDC.

FundersFunder number
Gobierno de España
Instituto de Salud Carlos III
European Centre for Disease Prevention and Control
Haridus- ja Teadusministeerium
Netherlands Ministry of Health, Welfare and Sport
European Commission
Horizon 2020
Bundesministerium für Bildung und Forschung031L0302A, 031L0300D
Bundesministerium für Bildung und Forschung
Wellcome Trust210758, 210758/Z/18/Z
Wellcome Trust
National Science Foundation2223933, 2135784
National Science Foundation
Horizon 2020 Framework Programme101003688
Horizon 2020 Framework Programme

    Keywords

    • epidemiology
    • Aggregation
    • Uncertainty
    • Scenarios
    • Modelling
    • Information

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