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In the present paper we propose an improvement of the Gillespie algorithm allowing us to study the time evolution of an ensemble of chemical reactions occurring in a varying volume, whose growth is directly related to the amount of some specific molecules, belonging to the reactions set. This allows us to study the stochastic evolution of a protocell, whose volume increases because of the production of container molecules. Several protocells models are considered and compared with the deterministic models.
|Number of pages||13|
|Journal||Computational and Mathematical Methods in Medicine|
|Publication status||Published - 2012|
- stochastic dynamics
- Gillespie algorithm
1/09/06 → …