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Abstract
In the present paper we propose an improvement of the Gillespie
algorithm allowing us to study the time evolution of an ensemble of chemical
reactions occurring in a varying volume, whose growth is directly related to
the amount of some specific molecules, belonging to the reactions set.
This allows us to study the stochastic evolution of a protocell, whose volume
increases because of the production of container molecules. Several protocells
models are considered and compared with the deterministic models.
Original language | English |
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Pages (from-to) | 1-13 |
Number of pages | 13 |
Journal | Computational and Mathematical Methods in Medicine |
Volume | 423627 |
Publication status | Published - 2012 |
Keywords
- stochastic dynamics
- Gillespie algorithm
- protocell
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Dynamical systems meet biology : synchronization of metabolism and growth
1/09/06 → …
Project: Research