Large scale coarse-grained simulations of supramolecular systems containing DNA and proteins in solution.

NAOME, Aymeric (Researcher)
Vercauteren, Daniel (CoI)
Laaksonen, Aatto (CoI)

Stockholm University

Project: PHD

3 Article

3 results

2015
A Coarse-Grained Simulation Study of the Structures, Energetics, and Dynamics of Linear and Circular DNA with Its Ions
Naome, A., Laaksonen, A. & Vercauteren, D. P., 9 Jun 2015, In: Journal of Chemical Theory and Computation. 11, 6, p. 2813-2826 14 p.
Research output: Contribution to journal › Article › peer-review
Systematic Hierarchical Coarse-Graining with the Inverse Monte Carlo Method
Lyubartsev, A. P., Naome, A., Vercauteren, D. P. & Laaksonen, A., 28 Dec 2015, In: The journal of chemical physics. 143, 24, 8 p., 243120.
Research output: Contribution to journal › Article › peer-review
2010
Molecular Dynamics Simulation of 8-Oxoguanine Containing DNA Fragments Reveals Altered Hydration and Ion Binding Patterns
Naome, A., Schyman, P., Laaksonen, A. & Vercauteren, D. P., 15 Apr 2010, In: Journal of physical chemistry B. 114, p. 4789-4801 13 p.
Research output: Contribution to journal › Article › peer-review