Research output per year
Research output per year
Project Details
Description
This projects aims at constructing coarse-grained models of biologically relevant biomolecular systems as to study the structural dynamics and the interactions between DNA and proteins by mean of molecular mechanics methods.
| Status | Finished |
|---|---|
| Effective start/end date | 1/10/09 → 1/10/13 |
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Research output
- 3 Article
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A Coarse-Grained Simulation Study of the Structures, Energetics, and Dynamics of Linear and Circular DNA with Its Ions
Naome, A., Laaksonen, A. & Vercauteren, D. P., 9 Jun 2015, In: Journal of Chemical Theory and Computation. 11, 6, p. 2813-2826 14 p.Research output: Contribution to journal › Article › peer-review
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Systematic Hierarchical Coarse-Graining with the Inverse Monte Carlo Method
Lyubartsev, A. P., Naome, A., Vercauteren, D. P. & Laaksonen, A., 28 Dec 2015, In: The Journal of chemical physics. 143, 24, 8 p., 243120.Research output: Contribution to journal › Article › peer-review
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Molecular Dynamics Simulation of 8-Oxoguanine Containing DNA Fragments Reveals Altered Hydration and Ion Binding Patterns
Naome, A., Schyman, P., Laaksonen, A. & Vercauteren, D. P., 15 Apr 2010, In: The Journal of Physical Chemistry. B, Condensed matter, materials, surfaces, interfaces & biophysical. 114, p. 4789-4801 13 p.Research output: Contribution to journal › Article › peer-review
Student theses
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Theoretical study of healthy and damaged DNA fragments in solution using molecular dynamics simulations
Naômé, A. (Author)Vercauteren, D. (Co-Supervisor) & Laaksonen, A. (Co-Supervisor), 2008Student thesis: Master types › Master in Chemistry