Derivation of a knowledge-based mean force potential at the atomic level by the inverse Boltzmann's law, for its use in "threading" or fold recognition

Project: PHD

Project Details

Description

For the 20 amino acids, 40 atomic types were defined according to their connectivity, chemical nature and location level (side-chain or backbone). A mean force potential for these atomic types is calculated in a set of 180 non-redundant protein structures
StatusFinished
Effective start/end date1/01/9531/12/99

Keywords

  • alignment
  • 3D structure modelling
  • threading
  • mean force potential
  • bioinformatics